J3_8BPO_022

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BPO_022 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2597

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8BPO|1|A1|U|2575
8BPO|1|A1|G|2576
*
8BPO|1|A1|C|2585
8BPO|1|A1|G|2586
8BPO|1|A1|A|2587
8BPO|1|A1|C|2588
8BPO|1|A1|C|2589
*
8BPO|1|A1|G|2756
8BPO|1|A1|A|2757

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain Y2

60S ribosomal protein L27

Chain f2

60S ribosomal protein L34