J3_8BQD_005

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUA*UUACG*CAAAG

Length

13 nucleotides

Bulged bases

8BQD|1|2|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQD_005 not in the Motif Atlas

Homologous match to J3_4V88_034

Geometric discrepancy: 0.2598

The information below is about J3_4V88_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23622.1

Basepair signature

cWW-tWW-tWW-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8BQD|1|2|C|1037
8BQD|1|2|U|1038
8BQD|1|2|A|1039
*
8BQD|1|2|U|1079
8BQD|1|2|U|1080
8BQD|1|2|A|1081
8BQD|1|2|C|1082
8BQD|1|2|G|1083
*
8BQD|1|2|C|1090
8BQD|1|2|A|1091
8BQD|1|2|A|1092
8BQD|1|2|A|1093
8BQD|1|2|G|1094

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S0-A

Chain a

40S ribosomal protein S21-A

Chain b

RPS22A isoform 1

Chain e

RPS26B isoform 1

Chain f

40S ribosomal protein S27-A