J3_8BQD_016
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_016 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.116
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|BQ|U|502
8BQD|1|BQ|C|503
*
8BQD|1|BQ|G|588
8BQD|1|BQ|A|589
8BQD|1|BQ|G|590
8BQD|1|BQ|G|591
8BQD|1|BQ|A|592
8BQD|1|BQ|C|593
8BQD|1|BQ|U|594
8BQD|1|BQ|G|595
8BQD|1|BQ|C|596
8BQD|1|BQ|G|597
*
8BQD|1|BQ|C|606
8BQD|1|BQ|A|607
8BQD|1|BQ|A|608
8BQD|1|BQ|G|609
8BQD|1|BQ|G|610
8BQD|1|BQ|A|611
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain BE
- RPL4A isoform 1
- Chain BG
- RPL32 isoform 1
- Chain BM
- 60S ribosomal protein L6-B
- Chain BO
- 60S ribosomal protein L7-A
Coloring options: