J3_8BQD_018
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_018 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1049
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BQD|1|BQ|A|828
8BQD|1|BQ|U|829
8BQD|1|BQ|A|830
8BQD|1|BQ|G|831
*
8BQD|1|BQ|C|863
8BQD|1|BQ|G|864
8BQD|1|BQ|U|865
8BQD|1|BQ|A|866
8BQD|1|BQ|G|867
*
8BQD|1|BQ|U|892
8BQD|1|BQ|C|893
8BQD|1|BQ|G|894
8BQD|1|BQ|A|895
8BQD|1|BQ|A|896
8BQD|1|BQ|U|897
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AT
- 60S ribosomal protein L43-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain BF
- 60S ribosomal protein L19-A
- Chain BN
- 60S ribosomal protein L34-A
Coloring options: