J3_8BQD_021

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8BQD|1|BQ|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQD_021 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1047

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8BQD|1|BQ|U|1479
8BQD|1|BQ|G|1480
8BQD|1|BQ|A|1481
8BQD|1|BQ|A|1482
8BQD|1|BQ|G|1483
8BQD|1|BQ|U|1484
8BQD|1|BQ|G|1485
*
8BQD|1|BQ|C|1857
8BQD|1|BQ|A|1858
8BQD|1|BQ|A|1859
*
8BQD|1|BQ|U|1871
8BQD|1|BQ|C|1872
8BQD|1|BQ|U|1873
8BQD|1|BQ|A|1874

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A