J3_8BQD_023
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_023 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.0863
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8BQD|1|BQ|U|1526
8BQD|1|BQ|C|1527
8BQD|1|BQ|G|1528
8BQD|1|BQ|A|1529
8BQD|1|BQ|U|1530
8BQD|1|BQ|C|1531
*
8BQD|1|BQ|G|1591
8BQD|1|BQ|G|1592
8BQD|1|BQ|A|1593
8BQD|1|BQ|A|1594
8BQD|1|BQ|U|1595
*
8BQD|1|BQ|A|1612
8BQD|1|BQ|A|1613
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AH
- 60S ribosomal protein L25
- Chain AI
- RPL38 isoform 1
- Chain AL
- 60S ribosomal protein L39
- Chain BN
- 60S ribosomal protein L34-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: