J3_8BQD_025
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_025 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.0953
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|BQ|A|2432
8BQD|1|BQ|U|2433
8BQD|1|BQ|U|2434
8BQD|1|BQ|G|2435
*
8BQD|1|BQ|C|2512
8BQD|1|BQ|U|2513
8BQD|1|BQ|U|2514
8BQD|1|BQ|A|2515
8BQD|1|BQ|U|2516
8BQD|1|BQ|U|2517
*
8BQD|1|BQ|A|2590
8BQD|1|BQ|A|2591
8BQD|1|BQ|G|2592
8BQD|1|BQ|A|2593
8BQD|1|BQ|C|2594
8BQD|1|BQ|A|2595
8BQD|1|BQ|U|2596
8BQD|1|BQ|U|2597
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AC
- 60S ribosomal protein L36-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AW
- 60S ribosomal protein L2-A
Coloring options: