3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BQD_025 not in the Motif Atlas
Homologous match to J3_8C3A_008
Geometric discrepancy: 0.0953
The information below is about J3_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

8BQD|1|BQ|A|2432
8BQD|1|BQ|U|2433
8BQD|1|BQ|U|2434
8BQD|1|BQ|G|2435
*
8BQD|1|BQ|C|2512
8BQD|1|BQ|U|2513
8BQD|1|BQ|U|2514
8BQD|1|BQ|A|2515
8BQD|1|BQ|U|2516
8BQD|1|BQ|U|2517
*
8BQD|1|BQ|A|2590
8BQD|1|BQ|A|2591
8BQD|1|BQ|G|2592
8BQD|1|BQ|A|2593
8BQD|1|BQ|C|2594
8BQD|1|BQ|A|2595
8BQD|1|BQ|U|2596
8BQD|1|BQ|U|2597

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L8-A
Chain AC
60S ribosomal protein L36-A
Chain AQ
60S ribosomal protein L15-A
Chain AW
60S ribosomal protein L2-A

Coloring options:


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