3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUC*GAA*UAAAAG
Length
12 nucleotides
Bulged bases
8BQD|1|BQ|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BQD_027 not in the Motif Atlas
Homologous match to J3_8C3A_010
Geometric discrepancy: 0.1014
The information below is about J3_8C3A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

8BQD|1|BQ|C|2664
8BQD|1|BQ|U|2665
8BQD|1|BQ|C|2666
*
8BQD|1|BQ|G|2690
8BQD|1|BQ|A|2691
8BQD|1|BQ|A|2692
*
8BQD|1|BQ|U|2701
8BQD|1|BQ|A|2702
8BQD|1|BQ|A|2703
8BQD|1|BQ|A|2704
8BQD|1|BQ|A|2705
8BQD|1|BQ|G|2706

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AG
RPL11B isoform 1
Chain AP
60S ribosomal protein L42-A
Chain BI
RPL5 isoform 1
Chain BJ
60S ribosomal protein L21-A
Chain BR
5S ribosomal RNA; 5S rRNA

Coloring options:


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