J3_8BQD_027
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_027 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1014
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BQD|1|BQ|C|2664
8BQD|1|BQ|U|2665
8BQD|1|BQ|C|2666
*
8BQD|1|BQ|G|2690
8BQD|1|BQ|A|2691
8BQD|1|BQ|A|2692
*
8BQD|1|BQ|U|2701
8BQD|1|BQ|A|2702
8BQD|1|BQ|A|2703
8BQD|1|BQ|A|2704
8BQD|1|BQ|A|2705
8BQD|1|BQ|G|2706
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AG
- RPL11B isoform 1
- Chain AP
- 60S ribosomal protein L42-A
- Chain BI
- RPL5 isoform 1
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
Coloring options: