3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
8BQD|1|2|A|46, 8BQD|1|2|A|47
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BQD_032 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.0754
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8BQD|1|2|A|41
8BQD|1|2|G|42
8BQD|1|2|A|43
8BQD|1|2|U|44
8BQD|1|2|U|45
8BQD|1|2|A|46
8BQD|1|2|A|47
8BQD|1|2|G|48
*
8BQD|1|2|C|431
8BQD|1|2|G|432
8BQD|1|2|C|433
8BQD|1|2|G|434
8BQD|1|2|C|435
8BQD|1|2|A|436
8BQD|1|2|A|437
8BQD|1|2|A|438
8BQD|1|2|U|439
*
8BQD|1|2|A|464
8BQD|1|2|G|465
8BQD|1|2|U|466

Current chains

Chain 2
18S rRNA

Nearby chains

Chain W
40S ribosomal protein S9-A
Chain c
40S ribosomal protein S23-A

Coloring options:


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