J3_8BQD_038
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8BQD|1|BQ|U|343, 8BQD|1|BQ|A|351, 8BQD|1|BS|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_038 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0667
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8BQD|1|BQ|C|340
8BQD|1|BQ|G|341
8BQD|1|BQ|A|342
8BQD|1|BQ|U|343
8BQD|1|BQ|A|344
8BQD|1|BQ|G|345
8BQD|1|BQ|C|346
8BQD|1|BQ|G|347
8BQD|1|BQ|A|348
8BQD|1|BQ|A|349
8BQD|1|BQ|C|350
8BQD|1|BQ|A|351
8BQD|1|BQ|A|352
8BQD|1|BQ|G|353
8BQD|1|BQ|U|354
8BQD|1|BQ|A|355
8BQD|1|BQ|C|356
*
8BQD|1|BQ|G|363
8BQD|1|BQ|G|364
8BQD|1|BQ|A|365
8BQD|1|BQ|A|366
8BQD|1|BQ|A|367
8BQD|1|BQ|G|368
*
8BQD|1|BS|C|21
8BQD|1|BS|U|22
8BQD|1|BS|U|23
8BQD|1|BS|G|24
Current chains
- Chain BQ
- 25S rRNA
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain BE
- RPL4A isoform 1
Coloring options: