J3_8BQD_041

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQD_041 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1012

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8BQD|1|BQ|A|1654
8BQD|1|BQ|G|1655
8BQD|1|BQ|A|1656
8BQD|1|BQ|C|1657
8BQD|1|BQ|G|1658
*
8BQD|1|BQ|C|1791
8BQD|1|BQ|C|1792
*
8BQD|1|BQ|G|1796
8BQD|1|BQ|A|1797
8BQD|1|BQ|A|1798
8BQD|1|BQ|A|1799
8BQD|1|BQ|A|1800
8BQD|1|BQ|U|1801

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain BN

60S ribosomal protein L34-A