J3_8BQD_042
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8BQD|1|BQ|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_042 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0736
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8BQD|1|BQ|G|2651
8BQD|1|BQ|U|2652
8BQD|1|BQ|C|2653
*
8BQD|1|BQ|G|2754
8BQD|1|BQ|C|2755
8BQD|1|BQ|C|2756
8BQD|1|BQ|U|2757
8BQD|1|BQ|A|2758
8BQD|1|BQ|U|2759
8BQD|1|BQ|C|2760
8BQD|1|BQ|G|2761
8BQD|1|BQ|A|2762
8BQD|1|BQ|U|2763
8BQD|1|BQ|C|2764
8BQD|1|BQ|C|2765
*
8BQD|1|BQ|G|2793
8BQD|1|BQ|G|2794
8BQD|1|BQ|U|2795
8BQD|1|BQ|G|2796
8BQD|1|BQ|C|2797
8BQD|1|BQ|C|2798
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AR
- 60S ribosomal protein L28
- Chain BB
- 60S ribosomal protein L18-A
- Chain BJ
- 60S ribosomal protein L21-A
Coloring options: