J3_8BQX_001

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_001 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1062

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8BQX|1|2|A|41
8BQX|1|2|G|42
*
8BQX|1|2|C|433
8BQX|1|2|G|434
8BQX|1|2|C|435
8BQX|1|2|A|436
8BQX|1|2|A|437
8BQX|1|2|A|438
8BQX|1|2|U|439
*
8BQX|1|2|A|464
8BQX|1|2|G|465
8BQX|1|2|U|466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A