J3_8BQX_020

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_020 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3401

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8BQX|1|BQ|G|1230
8BQX|1|BQ|A|1231
8BQX|1|BQ|C|1232
*
8BQX|1|BQ|G|1256
8BQX|1|BQ|C|1257
8BQX|1|BQ|U|1258
8BQX|1|BQ|A|1259
8BQX|1|BQ|A|1260
8BQX|1|BQ|G|1261
8BQX|1|BQ|G|1262
*
8BQX|1|BQ|C|1277
8BQX|1|BQ|A|1278
8BQX|1|BQ|C|1279

Current chains

Chain BQ

25S rRNA

Nearby chains