J3_8BQX_027

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

8BQX|1|BQ|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_027 not in the Motif Atlas

Homologous match to J3_8C3A_010

Geometric discrepancy: 0.1014

The information below is about J3_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8BQX|1|BQ|C|2664
8BQX|1|BQ|U|2665
8BQX|1|BQ|C|2666
*
8BQX|1|BQ|G|2690
8BQX|1|BQ|A|2691
8BQX|1|BQ|A|2692
*
8BQX|1|BQ|U|2701
8BQX|1|BQ|A|2702
8BQX|1|BQ|A|2703
8BQX|1|BQ|A|2704
8BQX|1|BQ|A|2705
8BQX|1|BQ|G|2706

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

RPL11B isoform 1

Chain AP

60S ribosomal protein L42-A

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A

Chain BR

5S ribosomal RNA; 5S rRNA