3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
8BQX|1|BQ|U|343, 8BQX|1|BQ|A|351, 8BQX|1|BS|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BQX_038 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0667
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8BQX|1|BQ|C|340
8BQX|1|BQ|G|341
8BQX|1|BQ|A|342
8BQX|1|BQ|U|343
8BQX|1|BQ|A|344
8BQX|1|BQ|G|345
8BQX|1|BQ|C|346
8BQX|1|BQ|G|347
8BQX|1|BQ|A|348
8BQX|1|BQ|A|349
8BQX|1|BQ|C|350
8BQX|1|BQ|A|351
8BQX|1|BQ|A|352
8BQX|1|BQ|G|353
8BQX|1|BQ|U|354
8BQX|1|BQ|A|355
8BQX|1|BQ|C|356
*
8BQX|1|BQ|G|363
8BQX|1|BQ|G|364
8BQX|1|BQ|A|365
8BQX|1|BQ|A|366
8BQX|1|BQ|A|367
8BQX|1|BQ|G|368
*
8BQX|1|BS|C|21
8BQX|1|BS|U|22
8BQX|1|BS|U|23
8BQX|1|BS|G|24

Current chains

Chain BQ
25S rRNA
Chain BS
5.8S rRNA

Nearby chains

Chain AF
60S ribosomal protein L37-A
Chain AK
60S ribosomal protein L26-A
Chain AL
60S ribosomal protein L39
Chain BE
60S ribosomal protein L4-A

Coloring options:


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