J3_8BQX_039
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8BQX|1|BQ|A|398, 8BQX|1|BQ|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQX_039 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0934
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BQX|1|BQ|A|369
8BQX|1|BQ|U|370
8BQX|1|BQ|G|371
8BQX|1|BQ|A|372
8BQX|1|BQ|A|373
8BQX|1|BQ|A|374
8BQX|1|BQ|A|375
8BQX|1|BQ|G|376
8BQX|1|BQ|A|377
8BQX|1|BQ|A|378
8BQX|1|BQ|C|379
*
8BQX|1|BQ|G|390
8BQX|1|BQ|A|391
8BQX|1|BQ|G|392
8BQX|1|BQ|U|393
8BQX|1|BQ|G|394
8BQX|1|BQ|A|395
8BQX|1|BQ|A|396
8BQX|1|BQ|A|397
8BQX|1|BQ|A|398
8BQX|1|BQ|A|399
8BQX|1|BQ|G|400
8BQX|1|BQ|U|401
8BQX|1|BQ|A|402
8BQX|1|BQ|C|403
8BQX|1|BQ|G|404
*
8BQX|1|BS|C|19
8BQX|1|BS|U|20
Current chains
- Chain BQ
- 25S rRNA
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: