3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
8BQX|1|BQ|A|398, 8BQX|1|BQ|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BQX_039 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.0934
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

8BQX|1|BQ|A|369
8BQX|1|BQ|U|370
8BQX|1|BQ|G|371
8BQX|1|BQ|A|372
8BQX|1|BQ|A|373
8BQX|1|BQ|A|374
8BQX|1|BQ|A|375
8BQX|1|BQ|G|376
8BQX|1|BQ|A|377
8BQX|1|BQ|A|378
8BQX|1|BQ|C|379
*
8BQX|1|BQ|G|390
8BQX|1|BQ|A|391
8BQX|1|BQ|G|392
8BQX|1|BQ|U|393
8BQX|1|BQ|G|394
8BQX|1|BQ|A|395
8BQX|1|BQ|A|396
8BQX|1|BQ|A|397
8BQX|1|BQ|A|398
8BQX|1|BQ|A|399
8BQX|1|BQ|G|400
8BQX|1|BQ|U|401
8BQX|1|BQ|A|402
8BQX|1|BQ|C|403
8BQX|1|BQ|G|404
*
8BQX|1|BS|C|19
8BQX|1|BS|U|20

Current chains

Chain BQ
25S rRNA
Chain BS
5.8S rRNA

Nearby chains

Chain AK
60S ribosomal protein L26-A
Chain AL
60S ribosomal protein L39
Chain AX
60S ribosomal protein L17-A
Chain BE
60S ribosomal protein L4-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2302 s