3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
8BQX|1|BQ|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BQX_042 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.0736
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

8BQX|1|BQ|G|2651
8BQX|1|BQ|U|2652
8BQX|1|BQ|C|2653
*
8BQX|1|BQ|G|2754
8BQX|1|BQ|C|2755
8BQX|1|BQ|C|2756
8BQX|1|BQ|U|2757
8BQX|1|BQ|A|2758
8BQX|1|BQ|U|2759
8BQX|1|BQ|C|2760
8BQX|1|BQ|G|2761
8BQX|1|BQ|A|2762
8BQX|1|BQ|U|2763
8BQX|1|BQ|C|2764
8BQX|1|BQ|C|2765
*
8BQX|1|BQ|G|2793
8BQX|1|BQ|G|2794
8BQX|1|BQ|U|2795
8BQX|1|BQ|G|2796
8BQX|1|BQ|C|2797
8BQX|1|BQ|C|2798

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AP
60S ribosomal protein L42-A
Chain AR
60S ribosomal protein L28
Chain BB
60S ribosomal protein L18-A
Chain BJ
60S ribosomal protein L21-A

Coloring options:


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