J3_8BR8_008
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UCGGGC*GGGAG*CA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_008 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1761
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8BR8|1|Lt|U|1210
8BR8|1|Lt|C|1211
8BR8|1|Lt|G|1212
8BR8|1|Lt|G|1213
8BR8|1|Lt|G|1214
8BR8|1|Lt|C|1215
*
8BR8|1|Lt|G|1264
8BR8|1|Lt|G|1265
8BR8|1|Lt|G|1266
8BR8|1|Lt|A|1267
8BR8|1|Lt|G|1268
*
8BR8|1|Lt|C|1285
8BR8|1|Lt|A|1286
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LD
- 5.8S rRNA
- Chain LG
- Ribosomal protein L39
- Chain LY
- Ribosomal protein L23A
- Chain Lh
- Ribosomal protein L34
- Chain Ll
- Ribosomal L38e
Coloring options: