J3_8BR8_011
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CCUG*CUCAC*GGACCCG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_011 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.1279
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BR8|1|Lt|C|1920
8BR8|1|Lt|C|1921
8BR8|1|Lt|U|1922
8BR8|1|Lt|G|1923
*
8BR8|1|Lt|C|1998
8BR8|1|Lt|U|1999
8BR8|1|Lt|C|2000
8BR8|1|Lt|A|2001
8BR8|1|Lt|C|2002
*
8BR8|1|Lt|G|2015
8BR8|1|Lt|G|2016
8BR8|1|Lt|A|2017
8BR8|1|Lt|C|2018
8BR8|1|Lt|C|2019
8BR8|1|Lt|C|2020
8BR8|1|Lt|G|2021
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain LI
- 60S ribosomal protein L7a
- Chain LO
- Ribosomal protein L15
- Chain Lj
- Ribosomal protein L36-1
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