J3_8BR8_023
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UCCCAG*CGAGAC*GCGAUA
- Length
- 18 nucleotides
- Bulged bases
- 8BR8|1|St|C|1027
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_023 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1548
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BR8|1|St|U|1025
8BR8|1|St|C|1026
8BR8|1|St|C|1027
8BR8|1|St|C|1028
8BR8|1|St|A|1029
8BR8|1|St|G|1030
*
8BR8|1|St|C|1069
8BR8|1|St|G|1070
8BR8|1|St|A|1071
8BR8|1|St|G|1072
8BR8|1|St|A|1073
8BR8|1|St|C|1074
*
8BR8|1|St|G|1125
8BR8|1|St|C|1126
8BR8|1|St|G|1127
8BR8|1|St|A|1128
8BR8|1|St|U|1129
8BR8|1|St|A|1130
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SB
- Ribosomal protein S2
- Chain SC
- Ribosomal protein S3
- Chain ST
- Ribosomal protein S16
- Chain SU
- Ribosomal protein S17
- Chain SX
- Ribosomal protein S20
- Chain Sh
- Ribosomal protein S29A
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