J3_8BR8_027
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GC*GUGAAAAGGACG*CCGCUCAAAAGACC
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_027 not in the Motif Atlas
- Geometric match to J3_4V9F_012
- Geometric discrepancy: 0.1981
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BR8|1|LD|G|20
8BR8|1|LD|C|21
*
8BR8|1|Lt|G|321
8BR8|1|Lt|U|322
8BR8|1|Lt|G|323
8BR8|1|Lt|A|324
8BR8|1|Lt|A|325
8BR8|1|Lt|A|326
8BR8|1|Lt|A|327
8BR8|1|Lt|G|328
8BR8|1|Lt|G|329
8BR8|1|Lt|A|330
8BR8|1|Lt|C|331
8BR8|1|Lt|G|332
*
8BR8|1|Lt|C|341
8BR8|1|Lt|C|342
8BR8|1|Lt|G|343
8BR8|1|Lt|C|344
8BR8|1|Lt|U|345
8BR8|1|Lt|C|346
8BR8|1|Lt|A|347
8BR8|1|Lt|A|348
8BR8|1|Lt|A|349
8BR8|1|Lt|A|350
8BR8|1|Lt|G|351
8BR8|1|Lt|A|352
8BR8|1|Lt|C|353
8BR8|1|Lt|C|354
Current chains
- Chain LD
- 5.8S rRNA
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LG
- Ribosomal protein L39
- Chain LQ
- Ribosomal protein L17
- Chain LZ
- Ribosomal protein L26
Coloring options: