J3_8BR8_028

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUCG*CGAUAGCGGACCAAGUAG*CGAACG

Length

28 nucleotides

Bulged bases

8BR8|1|LD|C|24, 8BR8|1|Lt|U|294, 8BR8|1|Lt|C|302, 8BR8|1|Lt|A|303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BR8_028 not in the Motif Atlas

Geometric match to J3_5J7L_067

Geometric discrepancy: 0.0907

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8BR8|1|LD|C|22
8BR8|1|LD|U|23
8BR8|1|LD|C|24
8BR8|1|LD|G|25
*
8BR8|1|Lt|C|291
8BR8|1|Lt|G|292
8BR8|1|Lt|A|293
8BR8|1|Lt|U|294
8BR8|1|Lt|A|295
8BR8|1|Lt|G|296
8BR8|1|Lt|C|297
8BR8|1|Lt|G|298
8BR8|1|Lt|G|299
8BR8|1|Lt|A|300
8BR8|1|Lt|C|301
8BR8|1|Lt|C|302
8BR8|1|Lt|A|303
8BR8|1|Lt|A|304
8BR8|1|Lt|G|305
8BR8|1|Lt|U|306
8BR8|1|Lt|A|307
8BR8|1|Lt|G|308
*
8BR8|1|Lt|C|315
8BR8|1|Lt|G|316
8BR8|1|Lt|A|317
8BR8|1|Lt|A|318
8BR8|1|Lt|C|319
8BR8|1|Lt|G|320

Current chains

Chain LD

5.8S rRNA

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LG

Ribosomal protein L39

Chain LZ

Ribosomal protein L26

Chain Lk

Ribosomal protein L37