J3_8BR8_029
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GC*GAGACGC*GAUCC
- Length
- 14 nucleotides
- Bulged bases
- 8BR8|1|LD|G|61, 8BR8|1|LD|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_029 not in the Motif Atlas
- Geometric match to J3_5TBW_071
- Geometric discrepancy: 0.1107
- The information below is about J3_5TBW_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8BR8|1|LD|G|45
8BR8|1|LD|C|46
*
8BR8|1|LD|G|59
8BR8|1|LD|A|60
8BR8|1|LD|G|61
8BR8|1|LD|A|62
8BR8|1|LD|C|63
8BR8|1|LD|G|64
8BR8|1|LD|C|65
*
8BR8|1|LD|G|96
8BR8|1|LD|A|97
8BR8|1|LD|U|98
8BR8|1|LD|C|99
8BR8|1|LD|C|100
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain LG
- Ribosomal protein L39
- Chain LY
- Ribosomal protein L23A
- Chain Li
- Ribosomal protein L29
- Chain Lk
- Ribosomal protein L37
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