J3_8BR8_033
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GUC*GCCUACCGAUCC*GGUGGC
- Length
- 21 nucleotides
- Bulged bases
- 8BR8|1|Lt|G|2220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_033 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1247
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8BR8|1|Lt|G|2075
8BR8|1|Lt|U|2076
8BR8|1|Lt|C|2077
*
8BR8|1|Lt|G|2178
8BR8|1|Lt|C|2179
8BR8|1|Lt|C|2180
8BR8|1|Lt|U|2181
8BR8|1|Lt|A|2182
8BR8|1|Lt|C|2183
8BR8|1|Lt|C|2184
8BR8|1|Lt|G|2185
8BR8|1|Lt|A|2186
8BR8|1|Lt|U|2187
8BR8|1|Lt|C|2188
8BR8|1|Lt|C|2189
*
8BR8|1|Lt|G|2216
8BR8|1|Lt|G|2217
8BR8|1|Lt|U|2218
8BR8|1|Lt|G|2219
8BR8|1|Lt|G|2220
8BR8|1|Lt|C|2221
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LR
- Ribosomal protein L18
- Chain LU
- Ribosomal protein L21
- Chain Lb
- Ribosomal protein L27a
- Chain Lp
- Ribosomal protein L44
- Chain Lu
- Transfer RNA; tRNA
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