J3_8BRM_004
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGAUCUA*UGG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8BRM|1|Lt|U|534, 8BRM|1|Lt|G|641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BRM_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.088
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BRM|1|Lt|U|531
8BRM|1|Lt|G|532
8BRM|1|Lt|A|533
8BRM|1|Lt|U|534
8BRM|1|Lt|C|535
8BRM|1|Lt|U|536
8BRM|1|Lt|A|537
*
8BRM|1|Lt|U|622
8BRM|1|Lt|G|623
8BRM|1|Lt|G|624
*
8BRM|1|Lt|C|640
8BRM|1|Lt|G|641
8BRM|1|Lt|A|642
8BRM|1|Lt|A|643
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain LG
- Ribosomal protein L39
- Chain LO
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
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