J3_8BRM_023

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCGGAC*GGGUG*UCAGACG

Length

18 nucleotides

Bulged bases

8BRM|1|St|G|960, 8BRM|1|St|G|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BRM_023 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.2332

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8BRM|1|St|C|958
8BRM|1|St|C|959
8BRM|1|St|G|960
8BRM|1|St|G|961
8BRM|1|St|A|962
8BRM|1|St|C|963
*
8BRM|1|St|G|1005
8BRM|1|St|G|1006
8BRM|1|St|G|1007
8BRM|1|St|U|1008
8BRM|1|St|G|1009
*
8BRM|1|St|U|1148
8BRM|1|St|C|1149
8BRM|1|St|A|1150
8BRM|1|St|G|1151
8BRM|1|St|A|1152
8BRM|1|St|C|1153
8BRM|1|St|G|1154

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SL

Ribosomal protein S10B

Chain Sh

Ribosomal protein S29A