J3_8BRM_027
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CACUG*CGUGGCCG*CCAG
- Length
- 17 nucleotides
- Bulged bases
- 8BRM|1|St|U|1179, 8BRM|1|St|C|1229
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BRM_027 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1787
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8BRM|1|St|C|1176
8BRM|1|St|A|1177
8BRM|1|St|C|1178
8BRM|1|St|U|1179
8BRM|1|St|G|1180
*
8BRM|1|St|C|1223
8BRM|1|St|G|1224
8BRM|1|St|U|1225
8BRM|1|St|G|1226
8BRM|1|St|G|1227
8BRM|1|St|C|1228
8BRM|1|St|C|1229
8BRM|1|St|G|1230
*
8BRM|1|St|C|1259
8BRM|1|St|C|1260
8BRM|1|St|A|1261
8BRM|1|St|G|1262
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SF
- Ribosomal protein S5
- Chain SV
- Ribosomal protein S18
- Chain SW
- Ribosomal protein S19e
- Chain Sc
- Ribosomal protein S25
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