J3_8BTK_004

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

8BTK|1|A2|A|1680

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_004 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1489

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BTK|1|A2|C|1219
8BTK|1|A2|C|1220
8BTK|1|A2|A|1221
8BTK|1|A2|G|1222
*
8BTK|1|A2|C|1646
8BTK|1|A2|C|1647
8BTK|1|A2|A|1648
8BTK|1|A2|G|1649
8BTK|1|A2|U|1650
8BTK|1|A2|A|1651
8BTK|1|A2|A|1652
*
8BTK|1|A2|U|1674
8BTK|1|A2|G|1675
8BTK|1|A2|A|1676
8BTK|1|A2|U|1677
8BTK|1|A2|U|1678
8BTK|1|A2|A2M|1679
8BTK|1|A2|A|1680
8BTK|1|A2|G|1681

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

Ribosomal protein S28

Chain Ae

Ribosomal protein S5

Chain Ap

uS9