J3_8BTK_007

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8BTK|1|A2|G|1275, 8BTK|1|A2|G|1508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1077

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8BTK|1|A2|C|1273
8BTK|1|A2|C|1274
8BTK|1|A2|G|1275
8BTK|1|A2|G|1276
8BTK|1|A2|A|1277
8BTK|1|A2|C|1278
*
8BTK|1|A2|G|1321
8BTK|1|A2|G|1322
8BTK|1|A2|G|1323
8BTK|1|A2|U|1324
8BTK|1|A2|G|1325
*
8BTK|1|A2|U|1505
8BTK|1|A2|U|1506
8BTK|1|A2|A|1507
8BTK|1|A2|G|1508
8BTK|1|A2|A|1509
8BTK|1|A2|U|1510
8BTK|1|A2|G|1511

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain Aj

Ribosomal protein eS10