J3_8BTK_012
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8BTK|1|B5|G|1596
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BTK_012 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1561
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BTK|1|B5|U|1486
8BTK|1|B5|G|1487
8BTK|1|B5|A|1488
8BTK|1|B5|A2M|1489
8BTK|1|B5|C|1490
8BTK|1|B5|PSU|1491
8BTK|1|B5|A|1492
*
8BTK|1|B5|U|1577
8BTK|1|B5|A|1578
8BTK|1|B5|G|1579
*
8BTK|1|B5|C|1595
8BTK|1|B5|G|1596
8BTK|1|B5|A|1597
8BTK|1|B5|A|1598
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- 60S ribosomal protein L8
- Chain BN
- Ribosomal protein L15
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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