J3_8BTK_016

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

8BTK|1|B5|U|2631, 8BTK|1|B5|A|2632

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_016 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.1034

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BTK|1|B5|G|2245
8BTK|1|B5|A|2246
8BTK|1|B5|A|2247
8BTK|1|B5|G|2248
*
8BTK|1|B5|C|2628
8BTK|1|B5|C|2629
8BTK|1|B5|A2M|2630
8BTK|1|B5|U|2631
8BTK|1|B5|A|2632
8BTK|1|B5|U|2633
8BTK|1|B5|C|2634
*
8BTK|1|B5|G|2643
8BTK|1|B5|U|2644
8BTK|1|B5|C|2645

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34

Chain Bj

Ribosomal protein L37

Chain Bl

eL39