J3_8BTK_021
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8BTK|1|B5|A|4210, 8BTK|1|B5|U|4211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BTK_021 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0815
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BTK|1|B5|U|4209
8BTK|1|B5|A|4210
8BTK|1|B5|U|4211
8BTK|1|B5|C|4212
*
8BTK|1|B5|G|4237
8BTK|1|B5|U|4238
8BTK|1|B5|U|4239
*
8BTK|1|B5|A|4253
8BTK|1|B5|C|4254
8BTK|1|B5|U|4255
8BTK|1|B5|A|4256
8BTK|1|B5|A|4257
8BTK|1|B5|U|4258
8BTK|1|B5|A|4259
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BO
- 60S ribosomal protein L13a
- Chain BV
- Ribosomal protein L23
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