J3_8BTK_038
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BTK_038 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.165
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8BTK|1|B5|U|2283
8BTK|1|B5|C|2284
8BTK|1|B5|G|2285
8BTK|1|B5|G|2286
8BTK|1|B5|U|2287
8BTK|1|B5|C|2288
*
8BTK|1|B5|G|2358
8BTK|1|B5|G|2359
8BTK|1|B5|A|2360
8BTK|1|B5|G|2361
8BTK|1|B5|U|2362
*
8BTK|1|B5|A|2379
8BTK|1|B5|A|2380
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BX
- Ribosomal_L23eN domain-containing protein
- Chain Bg
- 60S ribosomal protein L34
- Chain Bk
- eL38
- Chain Bl
- eL39
Coloring options: