J3_8BTK_045
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8BTK|1|B7|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BTK_045 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1014
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BTK|1|B7|C|9
8BTK|1|B7|C|10
8BTK|1|B7|A|11
8BTK|1|B7|U|12
8BTK|1|B7|A|13
8BTK|1|B7|C|14
*
8BTK|1|B7|G|65
8BTK|1|B7|G|66
*
8BTK|1|B7|U|109
8BTK|1|B7|G|110
Current chains
- Chain B7
- 5S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BI
- Ribosomal protein L10
- Chain BT
- 60S ribosomal protein L21
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