J3_8BUU_027
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 8BUU|1|a|U|1249, 8BUU|1|a|U|1311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BUU_027 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1245
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8BUU|1|a|C|1246
8BUU|1|a|A|1247
8BUU|1|a|A|1248
8BUU|1|a|U|1249
8BUU|1|a|G|1250
*
8BUU|1|a|C|1305
8BUU|1|a|U|1306
8BUU|1|a|C|1307
8BUU|1|a|A|1308
8BUU|1|a|G|1309
8BUU|1|a|U|1310
8BUU|1|a|U|1311
8BUU|1|a|C|1312
*
8BUU|1|a|G|1343
8BUU|1|a|C|1344
8BUU|1|a|U|1345
8BUU|1|a|G|1346
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain 9
- ExpZ
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
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