3D structure

PDB id
8C00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGA*UAAUA*UA
Length
10 nucleotides
Bulged bases
8C00|1|2|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8C00_002 not in the Motif Atlas
Geometric match to J3_4V88_080
Geometric discrepancy: 0.1204
The information below is about J3_4V88_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.3
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

8C00|1|2|U|633
8C00|1|2|G|634
8C00|1|2|A|635
*
8C00|1|2|U|861
8C00|1|2|A|862
8C00|1|2|A|863
8C00|1|2|U|864
8C00|1|2|A|865
*
8C00|1|2|U|965
8C00|1|2|A|966

Current chains

Chain 2
18S rRNA precursor

Nearby chains

Chain U
40S ribosomal protein S7-A
Chain X
40S ribosomal protein S11-A
Chain Y
40S ribosomal protein S13
Chain b
40S ribosomal protein S22-A
Chain c
40S ribosomal protein S23-A
Chain f
40S ribosomal protein S27-A

Coloring options:


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