J3_8C00_006

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C00|1|2|C|1161
8C00|1|2|C|1162
8C00|1|2|A|1163
8C00|1|2|G|1164
*
8C00|1|2|C|1581
8C00|1|2|U|1582
8C00|1|2|A|1583
8C00|1|2|G|1584
8C00|1|2|U|1585
8C00|1|2|A|1586
8C00|1|2|A|1587
*
8C00|1|2|U|1609
8C00|1|2|G|1610
8C00|1|2|A|1611
8C00|1|2|U|1612
8C00|1|2|U|1613
8C00|1|2|A|1614
8C00|1|2|C|1615
8C00|1|2|G|1616

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain B

rpS5

Chain F

40S ribosomal protein S16-A

Chain L

40S ribosomal protein S28-A