3D structure

PDB id
8C00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
8C00|1|2|U|1473, 8C00|1|2|G|1539, 8C00|1|2|G|1572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8C00_008 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.1916
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

8C00|1|2|C|1470
8C00|1|2|A|1471
8C00|1|2|C|1472
8C00|1|2|U|1473
8C00|1|2|G|1474
*
8C00|1|2|C|1533
8C00|1|2|G|1534
8C00|1|2|U|1535
8C00|1|2|G|1536
8C00|1|2|C|1537
8C00|1|2|U|1538
8C00|1|2|G|1539
8C00|1|2|G|1540
*
8C00|1|2|C|1571
8C00|1|2|G|1572
8C00|1|2|A|1573
8C00|1|2|G|1574

Current chains

Chain 2
18S rRNA precursor

Nearby chains

Chain B
rpS5
Chain H
40S ribosomal protein S18-A
Chain I
40S ribosomal protein S19-A
Chain K
40S ribosomal protein S25-A
Chain r
Serine/threonine-protein kinase RIO2

Coloring options:


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