3D structure

PDB id
8C00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
8C00|1|2|A|47
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8C00_009 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.1105
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8C00|1|2|A|41
8C00|1|2|G|42
8C00|1|2|A|43
8C00|1|2|U|44
8C00|1|2|U|45
8C00|1|2|A|46
8C00|1|2|A|47
8C00|1|2|G|48
*
8C00|1|2|C|431
8C00|1|2|G|432
8C00|1|2|C|433
8C00|1|2|G|434
8C00|1|2|C|435
8C00|1|2|A|436
8C00|1|2|A|437
8C00|1|2|A|438
8C00|1|2|U|439
*
8C00|1|2|A|464
8C00|1|2|G|465
8C00|1|2|U|466

Current chains

Chain 2
18S rRNA precursor

Nearby chains

Chain W
40S ribosomal protein S9-A
Chain c
40S ribosomal protein S23-A
Chain t
Ribosome biogenesis protein TSR1

Coloring options:


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