J3_8C00_009
3D structure
- PDB id
- 8C00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8C00|1|2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8C00_009 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.1105
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8C00|1|2|A|41
8C00|1|2|G|42
8C00|1|2|A|43
8C00|1|2|U|44
8C00|1|2|U|45
8C00|1|2|A|46
8C00|1|2|A|47
8C00|1|2|G|48
*
8C00|1|2|C|431
8C00|1|2|G|432
8C00|1|2|C|433
8C00|1|2|G|434
8C00|1|2|C|435
8C00|1|2|A|436
8C00|1|2|A|437
8C00|1|2|A|438
8C00|1|2|U|439
*
8C00|1|2|A|464
8C00|1|2|G|465
8C00|1|2|U|466
Current chains
- Chain 2
- 18S rRNA precursor
Nearby chains
- Chain W
- 40S ribosomal protein S9-A
- Chain c
- 40S ribosomal protein S23-A
- Chain t
- Ribosome biogenesis protein TSR1
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