J3_8C00_009

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8C00|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C00_009 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1105

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8C00|1|2|A|41
8C00|1|2|G|42
8C00|1|2|A|43
8C00|1|2|U|44
8C00|1|2|U|45
8C00|1|2|A|46
8C00|1|2|A|47
8C00|1|2|G|48
*
8C00|1|2|C|431
8C00|1|2|G|432
8C00|1|2|C|433
8C00|1|2|G|434
8C00|1|2|C|435
8C00|1|2|A|436
8C00|1|2|A|437
8C00|1|2|A|438
8C00|1|2|U|439
*
8C00|1|2|A|464
8C00|1|2|G|465
8C00|1|2|U|466

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain t

Ribosome biogenesis protein TSR1