J3_8C01_006

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C01_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1373

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8C01|1|2|C|1161
8C01|1|2|C|1162
8C01|1|2|A|1163
8C01|1|2|G|1164
*
8C01|1|2|C|1581
8C01|1|2|U|1582
8C01|1|2|A|1583
8C01|1|2|G|1584
8C01|1|2|U|1585
8C01|1|2|A|1586
8C01|1|2|A|1587
*
8C01|1|2|U|1609
8C01|1|2|G|1610
8C01|1|2|A|1611
8C01|1|2|U|1612
8C01|1|2|U|1613
8C01|1|2|A|1614
8C01|1|2|C|1615
8C01|1|2|G|1616

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain L

40S ribosomal protein S28-A