J3_8C3A_016

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C3A_016 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3309

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8C3A|1|AS|G|1226
8C3A|1|AS|A|1227
8C3A|1|AS|C|1228
*
8C3A|1|AS|G|1252
8C3A|1|AS|C|1253
8C3A|1|AS|U|1254
8C3A|1|AS|A|1255
8C3A|1|AS|A|1256
8C3A|1|AS|G|1257
8C3A|1|AS|G|1258
*
8C3A|1|AS|C|1273
8C3A|1|AS|A|1274
8C3A|1|AS|C|1275

Current chains

Chain AS

25S

Nearby chains

Chain p0

60S acidic ribosomal protein P0