J3_8C3A_065
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8C3A|1|AS|A|398, 8C3A|1|AS|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8C3A_065 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0585
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8C3A|1|AS|A|369
8C3A|1|AS|U|370
8C3A|1|AS|G|371
8C3A|1|AS|A|372
8C3A|1|AS|A|373
8C3A|1|AS|A|374
8C3A|1|AS|A|375
8C3A|1|AS|G|376
8C3A|1|AS|A|377
8C3A|1|AS|A|378
8C3A|1|AS|C|379
*
8C3A|1|AS|G|390
8C3A|1|AS|A|391
8C3A|1|AS|G|392
8C3A|1|AS|U|393
8C3A|1|AS|G|394
8C3A|1|AS|A|395
8C3A|1|AS|A|396
8C3A|1|AS|A|397
8C3A|1|AS|A|398
8C3A|1|AS|A|399
8C3A|1|AS|G|400
8C3A|1|AS|U|401
8C3A|1|AS|A|402
8C3A|1|AS|C|403
8C3A|1|AS|G|404
*
8C3A|1|AU|C|19
8C3A|1|AU|U|20
Current chains
- Chain AS
- 25S
- Chain AU
- 5.8S
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BK
- Ribosomal protein L22
- Chain BT
- Ribosomal protein L24
- Chain CG
- 60S ribosomal protein L39
Coloring options: