J3_8C3A_077

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C3A_077 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.0439

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8C3A|1|B|A|41
8C3A|1|B|G|42
*
8C3A|1|B|C|431
8C3A|1|B|G|432
8C3A|1|B|C|433
8C3A|1|B|A|434
8C3A|1|B|A|435
8C3A|1|B|A|436
8C3A|1|B|U|437
*
8C3A|1|B|A|462
8C3A|1|B|G|463
8C3A|1|B|U|464

Current chains

Chain B

18S

Nearby chains

Chain L

Ribosomal protein S4

Chain Z

Ribosomal protein S23 (S12)