J3_8C8Y_006

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8C8Y|1|A|C|1607, 8C8Y|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C8Y_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1315

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8C8Y|1|A|C|1306
8C8Y|1|A|A|1307
8C8Y|1|A|A|1308
8C8Y|1|A|G|1309
*
8C8Y|1|A|C|1605
8C8Y|1|A|C|1606
8C8Y|1|A|C|1607
8C8Y|1|A|A|1608
8C8Y|1|A|A|1609
8C8Y|1|A|A|1610
8C8Y|1|A|C|1611
*
8C8Y|1|A|G|1620
8C8Y|1|A|U|1621
8C8Y|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34