3D structure

PDB id
8C8Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.12 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8C8Z_003 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.1772
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8C8Z|1|A|C|1298
8C8Z|1|A|G|1299
8C8Z|1|A|G|1300
8C8Z|1|A|A|1301
8C8Z|1|A|A|1302
8C8Z|1|A|G|1303
*
8C8Z|1|A|C|1625
8C8Z|1|A|A|1626
8C8Z|1|A|G|1627
*
8C8Z|1|A|C|1639
8C8Z|1|A|A|1640
8C8Z|1|A|A|1641
8C8Z|1|A|G|1642

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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