J3_8C91_011

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C91_011 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5575

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8C91|1|A|U|1344
8C91|1|A|C|1345
8C91|1|A|G|1346
8C91|1|A|A|1347
8C91|1|A|C|1348
8C91|1|A|C|1349
8C91|1|A|C|1350
*
8C91|1|A|G|1381
8C91|1|A|G|1382
8C91|1|A|A|1383
8C91|1|A|A|1384
8C91|1|A|A|1385
*
8C91|1|A|U|1402
8C91|1|A|A|1403

Current chains

Chain A

23S rRNA

Nearby chains