J3_8C92_010

3D structure

PDB id

8C92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C92_010 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.2574

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8C92|1|A|G|1424
8C92|1|A|G|1425
8C92|1|A|G|1426
8C92|1|A|A|1427
8C92|1|A|C|1428
8C92|1|A|G|1429
*
8C92|1|A|C|1564
8C92|1|A|C|1565
*
8C92|1|A|G|1568
8C92|1|A|A|1569
8C92|1|A|A|1570
8C92|1|A|A|1571
8C92|1|A|A|1572
8C92|1|A|G|1573
8C92|1|A|C|1574

Current chains

Chain A

23S rRNA

Nearby chains