J3_8C94_001

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C94_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1531

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8C94|1|A|G|30
8C94|1|A|C|31
*
8C94|1|A|G|474
8C94|1|A|C|475
8C94|1|A|G|476
8C94|1|A|A|477
8C94|1|A|A|478
8C94|1|A|A|479
8C94|1|A|A|480
8C94|1|A|G|481
*
8C94|1|A|C|509
8C94|1|A|C|510

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24