3D structure

PDB id
8C94 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
8C94|1|A|U|2833, 8C94|1|A|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8C94_007 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1901
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

8C94|1|A|G|2812
8C94|1|A|A|2813
8C94|1|A|A|2814
8C94|1|A|C|2815
*
8C94|1|A|G|2831
8C94|1|A|U|2832
8C94|1|A|U|2833
8C94|1|A|G|2834
8C94|1|A|A|2835
8C94|1|A|U|2836
*
8C94|1|A|A|2882
8C94|1|A|A|2883
8C94|1|A|U|2884
8C94|1|A|G|2885
8C94|1|A|A|2886
8C94|1|A|A|2887
8C94|1|A|C|2888

Current chains

Chain A
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22

Coloring options:


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